Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000011608Protein FAM60A-like. (207 aa)    
Predicted Functional Partners:
ENSSGRP00000034824
Histone deacetylase complex subunit SAP130-like isoform X1.
    
 0.955
ENSSGRP00000037942
Histone deacetylase complex subunit SAP130-like.
    
 0.955
Sap130
Histone deacetylase complex subunit SAP130.
    
 0.936
ENSSGRP00000105660
Histone deacetylase complex subunit SAP130-like.
    
 0.936
ENSSGRP00000033857
BAH and coiled-coil domain-containing protein 1-like isoform X1.
    
 
 0.933
ENSSGRP00000087320
AT-rich interactive domain-containing protein 4B-like.
   
 
 0.927
ENSSGRP00000079712
annotation not available
    
 
 0.925
SAP30L
Histone deacetylase complex subunit SAP30L-like.
    
 
 0.925
LOC107560009
Paired amphipathic helix protein Sin3a-like isoform X1.
    
 0.912
ENSSGRP00000088120
Paired amphipathic helix protein Sin3a-like.
    
 0.912
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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