STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107598336U11/U12 small nuclear ribonucleoprotein 20 kDa protein. (174 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein Sm D2 isoform X1.
   
 0.983
LOC107557830
Small nuclear ribonucleoprotein Sm D2-like.
   
 0.983
ENSSGRP00000076381
Small nuclear ribonucleoprotein F-like isoform X1.
   
 0.981
LOC107548810
Small nuclear ribonucleoprotein F.
   
 0.981
LOC107580725
Small nuclear ribonucleoprotein E isoform X1.
   
 0.971
ENSSGRP00000075801
annotation not available
   
 0.971
LOC107580725-2
Small nuclear ribonucleoprotein E.
   
 0.971
LOC107569635
Splicing factor 3B subunit 1 isoform X1.
   
 0.971
LOC107595847
Splicing factor 3B subunit 1-like isoform X1.
   
 0.971
ENSSGRP00000002006
Splicing factor 3B subunit 4.
   
 0.964
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.