Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107598336U11/U12 small nuclear ribonucleoprotein 20 kDa protein. (174 aa)    
Predicted Functional Partners:
LOC107548897
U11/U12 small nuclear ribonucleoprotein 65 kDa protein.
   
 0.994
LOC107590356
U11/U12 small nuclear ribonucleoprotein 65 kDa protein.
   
 0.994
ENSSGRP00000101922
Zinc finger CCHC-type and RNA binding motif 1.
    
 0.992
ENSSGRP00000024930
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X1.
    
 0.980
ENSSGRP00000053152
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.980
pdcd7
Programmed cell death protein 7.
   
 0.980
ENSSGRP00000076381
Small nuclear ribonucleoprotein F-like isoform X1.
   
 0.975
LOC107548810
Small nuclear ribonucleoprotein F.
   
 0.975
ENSSGRP00000006652
annotation not available
   
 0.970
LOC107598637
Small nuclear ribonucleoprotein G.
   
 0.970
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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