Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107578469Sestrin-2-like. (394 aa)    
Predicted Functional Partners:
LOC107592481
WD repeat-containing protein mio.
    
 0.968
ENSSGRP00000108106
WD repeat-containing protein mio-like.
    
 0.968
ENSSGRP00000011510
WD repeat-containing protein 24-like.
    
 0.966
wdr24
WD repeat-containing protein 24 isoform X1.
    
 0.966
ENSSGRP00000064175
WD repeat-containing protein 59-like.
    
 0.961
wdr59
WD repeat-containing protein 59 isoform X1.
    
 0.961
seh1l
Nucleoporin SEH1 isoform X1.
    
 0.919
ENSSGRP00000048908
SEH1-like (S. cerevisiae).
    
 0.919
LOC107562731
Protein transport protein SEC13.
    
 0.912
LOC107557974
Protein transport protein SEC13.
    
 0.912
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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