Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pax8Paired box protein Pax-8. (455 aa)    
Predicted Functional Partners:
LOC107589700
LIM/homeobox protein Lhx1.
   
 0.706
ENSSGRP00000079647
LIM/homeobox protein Lhx1-like.
   
 0.706
LOC107600607
LIM/homeobox protein Lhx1-like.
   
 0.632
ENSSGRP00000015910
Eyes absent homolog 1-like.
     
 0.625
ENSSGRP00000109181
Eyes absent homolog 1.
     
 0.625
ENSSGRP00000023426
Forkhead box protein E1-like.
   
  
 0.609
foxe1
Forkhead box protein E1.
   
  
 0.609
ENSSGRP00000051959
Thyroid stimulating hormone receptor.
      
 0.606
TSHR
Thyroid stimulating hormone receptor.
      
 0.606
ENSSGRP00000040045
Follicle stimulating hormone receptor.
      
 0.587
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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