pkp4 protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

pkp4

Plakophilin-4 isoform X1. (1132 aa)

Predicted Functional Partners:

ctnnb1

0.779

LOC107570993

0.779

ENSSGRP00000067405

0.779

LOC107592060

0.779

LOC107573466

0.751

ctnna2

0.751

ENSSGRP00000019399

0.751

ENSSGRP00000077935

0.751

ENSSGRP00000077979

0.751

ENSSGRP00000097096

0.751

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000019399	ENSSGRP00000067405	ENSSGRP00000019399	ENSSGRP00000067405	annotation not available	Catenin beta-1-like.	0.931
ENSSGRP00000019399	ENSSGRP00000077935	ENSSGRP00000019399	ENSSGRP00000077935	annotation not available	Catenin (cadherin-associated protein), alpha 2.	0.675
ENSSGRP00000019399	ENSSGRP00000077979	ENSSGRP00000019399	ENSSGRP00000077979	annotation not available	Catenin alpha-2-like.	0.637
ENSSGRP00000019399	ENSSGRP00000097096	ENSSGRP00000019399	ENSSGRP00000097096	annotation not available	annotation not available	0.542
ENSSGRP00000019399	LOC107570993	ENSSGRP00000019399	ENSSGRP00000047498	annotation not available	Catenin beta-1 isoform X1.	0.931
ENSSGRP00000019399	LOC107573466	ENSSGRP00000019399	ENSSGRP00000010636	annotation not available	Catenin alpha-2-like.	0.646
ENSSGRP00000019399	LOC107592060	ENSSGRP00000019399	ENSSGRP00000099877	annotation not available	Catenin beta-1-like.	0.916
ENSSGRP00000019399	ctnna2	ENSSGRP00000019399	ENSSGRP00000016400	annotation not available	Catenin alpha-2.	0.542
ENSSGRP00000019399	ctnnb1	ENSSGRP00000019399	ENSSGRP00000010620	annotation not available	Catenin beta 1.	0.916
ENSSGRP00000019399	pkp4	ENSSGRP00000019399	ENSSGRP00000011733	annotation not available	Plakophilin-4 isoform X1.	0.751
ENSSGRP00000067405	ENSSGRP00000019399	ENSSGRP00000067405	ENSSGRP00000019399	Catenin beta-1-like.	annotation not available	0.931
ENSSGRP00000067405	ENSSGRP00000077935	ENSSGRP00000067405	ENSSGRP00000077935	Catenin beta-1-like.	Catenin (cadherin-associated protein), alpha 2.	0.931
ENSSGRP00000067405	ENSSGRP00000077979	ENSSGRP00000067405	ENSSGRP00000077979	Catenin beta-1-like.	Catenin alpha-2-like.	0.931
ENSSGRP00000067405	ENSSGRP00000097096	ENSSGRP00000067405	ENSSGRP00000097096	Catenin beta-1-like.	annotation not available	0.931
ENSSGRP00000067405	LOC107573466	ENSSGRP00000067405	ENSSGRP00000010636	Catenin beta-1-like.	Catenin alpha-2-like.	0.931
ENSSGRP00000067405	LOC107592060	ENSSGRP00000067405	ENSSGRP00000099877	Catenin beta-1-like.	Catenin beta-1-like.	0.863
ENSSGRP00000067405	ctnna2	ENSSGRP00000067405	ENSSGRP00000016400	Catenin beta-1-like.	Catenin alpha-2.	0.931
ENSSGRP00000067405	ctnnb1	ENSSGRP00000067405	ENSSGRP00000010620	Catenin beta-1-like.	Catenin beta 1.	0.863
ENSSGRP00000067405	pkp4	ENSSGRP00000067405	ENSSGRP00000011733	Catenin beta-1-like.	Plakophilin-4 isoform X1.	0.779
ENSSGRP00000077935	ENSSGRP00000019399	ENSSGRP00000077935	ENSSGRP00000019399	Catenin (cadherin-associated protein), alpha 2.	annotation not available	0.675