Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107578520Luc7-like protein 3. (228 aa)    
Predicted Functional Partners:
ENSSGRP00000012254
annotation not available
   
 0.942
LOC107588581
RNA-binding protein 25-like.
   
 0.942
ENSSGRP00000069786
RNA binding motif protein 25a.
   
 0.942
ENSSGRP00000073400
RNA binding motif protein 25b.
   
 0.942
Rbm25
RNA-binding protein 25.
   
 0.942
ENSSGRP00000094727
RNA binding motif protein 25b.
   
 0.942
pnisr
Arginine/serine-rich protein PNISR isoform X1.
   
  
 0.912
LOC107587767
Arginine/serine-rich protein PNISR-like isoform X1.
   
  
 0.912
LOC107555169
HIV Tat-specific factor 1-like.
   
 
 0.857
LOC107602070
RNA-binding protein 39-like isoform X1.
   
 0.857
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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