scnm1 protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

scnm1

Sodium channel modifier 1 isoform X1. (254 aa)

Predicted Functional Partners:

armc7

0.916

LOC107569635

0.836

LOC107595847

0.836

rnf113a

0.813

ENSSGRP00000111916

0.813

SF3B2

0.808

ENSSGRP00000025646

0.808

ENSSGRP00000054041

0.808

LOC107548576

0.808

ENSSGRP00000080948

0.808

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000025646	ENSSGRP00000054041	ENSSGRP00000025646	ENSSGRP00000054041	Splicing factor 3b, subunit 2.	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	0.983
ENSSGRP00000025646	ENSSGRP00000080948	ENSSGRP00000025646	ENSSGRP00000080948	Splicing factor 3b, subunit 2.	pre-mRNA processing factor 8.	0.975
ENSSGRP00000025646	ENSSGRP00000111916	ENSSGRP00000025646	ENSSGRP00000111916	Splicing factor 3b, subunit 2.	LOW QUALITY PROTEIN: RING finger protein 113A-like.	0.964
ENSSGRP00000025646	LOC107548576	ENSSGRP00000025646	ENSSGRP00000064131	Splicing factor 3b, subunit 2.	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.975
ENSSGRP00000025646	LOC107569635	ENSSGRP00000025646	ENSSGRP00000105204	Splicing factor 3b, subunit 2.	Splicing factor 3B subunit 1 isoform X1.	0.996
ENSSGRP00000025646	LOC107595847	ENSSGRP00000025646	ENSSGRP00000105982	Splicing factor 3b, subunit 2.	Splicing factor 3B subunit 1-like isoform X1.	0.996
ENSSGRP00000025646	armc7	ENSSGRP00000025646	ENSSGRP00000012801	Splicing factor 3b, subunit 2.	Armadillo repeat-containing protein 7.	0.904
ENSSGRP00000025646	rnf113a	ENSSGRP00000025646	ENSSGRP00000107949	Splicing factor 3b, subunit 2.	RING finger protein 113A.	0.964
ENSSGRP00000025646	scnm1	ENSSGRP00000025646	ENSSGRP00000011772	Splicing factor 3b, subunit 2.	Sodium channel modifier 1 isoform X1.	0.808
ENSSGRP00000054041	ENSSGRP00000025646	ENSSGRP00000054041	ENSSGRP00000025646	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Splicing factor 3b, subunit 2.	0.983
ENSSGRP00000054041	ENSSGRP00000080948	ENSSGRP00000054041	ENSSGRP00000080948	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	pre-mRNA processing factor 8.	0.986
ENSSGRP00000054041	ENSSGRP00000111916	ENSSGRP00000054041	ENSSGRP00000111916	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	LOW QUALITY PROTEIN: RING finger protein 113A-like.	0.986
ENSSGRP00000054041	LOC107548576	ENSSGRP00000054041	ENSSGRP00000064131	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.986
ENSSGRP00000054041	LOC107569635	ENSSGRP00000054041	ENSSGRP00000105204	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Splicing factor 3B subunit 1 isoform X1.	0.989
ENSSGRP00000054041	LOC107595847	ENSSGRP00000054041	ENSSGRP00000105982	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Splicing factor 3B subunit 1-like isoform X1.	0.989
ENSSGRP00000054041	SF3B2	ENSSGRP00000054041	ENSSGRP00000019868	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Splicing factor 3b subunit 2.	0.983
ENSSGRP00000054041	armc7	ENSSGRP00000054041	ENSSGRP00000012801	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Armadillo repeat-containing protein 7.	0.904
ENSSGRP00000054041	rnf113a	ENSSGRP00000054041	ENSSGRP00000107949	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	RING finger protein 113A.	0.986
ENSSGRP00000054041	scnm1	ENSSGRP00000054041	ENSSGRP00000011772	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	Sodium channel modifier 1 isoform X1.	0.808
ENSSGRP00000080948	ENSSGRP00000025646	ENSSGRP00000080948	ENSSGRP00000025646	pre-mRNA processing factor 8.	Splicing factor 3b, subunit 2.	0.975