ENSSGRP00000011869 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000011869

Protein jagged-1b. (1161 aa)

Predicted Functional Partners:

ENSSGRP00000068938

0.904

ENSSGRP00000109007

0.904

ENSSGRP00000040054

0.867

ENSSGRP00000083567

0.867

ENSSGRP00000005304

0.865

ENSSGRP00000005459

0.865

ENSSGRP00000048421

0.865

Notch1

0.865

ENSSGRP00000023188

0.796

ENSSGRP00000022074

0.780

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005304	ENSSGRP00000011869	ENSSGRP00000005304	ENSSGRP00000011869	Neurogenic locus notch homolog protein 1-like.	Protein jagged-1b.	0.865
ENSSGRP00000005304	ENSSGRP00000022074	ENSSGRP00000005304	ENSSGRP00000022074	Neurogenic locus notch homolog protein 1-like.	annotation not available	0.804
ENSSGRP00000005304	ENSSGRP00000023188	ENSSGRP00000005304	ENSSGRP00000023188	Neurogenic locus notch homolog protein 1-like.	annotation not available	0.813
ENSSGRP00000005304	ENSSGRP00000040054	ENSSGRP00000005304	ENSSGRP00000040054	Neurogenic locus notch homolog protein 1-like.	Notch receptor 3.	0.886
ENSSGRP00000005304	ENSSGRP00000083567	ENSSGRP00000005304	ENSSGRP00000083567	Neurogenic locus notch homolog protein 1-like.	Neurogenic locus notch homolog protein 2-like isoform X1.	0.886
ENSSGRP00000005459	ENSSGRP00000011869	ENSSGRP00000005459	ENSSGRP00000011869	Neurogenic locus notch homolog protein 1-like.	Protein jagged-1b.	0.865
ENSSGRP00000005459	ENSSGRP00000022074	ENSSGRP00000005459	ENSSGRP00000022074	Neurogenic locus notch homolog protein 1-like.	annotation not available	0.804
ENSSGRP00000005459	ENSSGRP00000023188	ENSSGRP00000005459	ENSSGRP00000023188	Neurogenic locus notch homolog protein 1-like.	annotation not available	0.813
ENSSGRP00000005459	ENSSGRP00000040054	ENSSGRP00000005459	ENSSGRP00000040054	Neurogenic locus notch homolog protein 1-like.	Notch receptor 3.	0.886
ENSSGRP00000005459	ENSSGRP00000083567	ENSSGRP00000005459	ENSSGRP00000083567	Neurogenic locus notch homolog protein 1-like.	Neurogenic locus notch homolog protein 2-like isoform X1.	0.886
ENSSGRP00000011869	ENSSGRP00000005304	ENSSGRP00000011869	ENSSGRP00000005304	Protein jagged-1b.	Neurogenic locus notch homolog protein 1-like.	0.865
ENSSGRP00000011869	ENSSGRP00000005459	ENSSGRP00000011869	ENSSGRP00000005459	Protein jagged-1b.	Neurogenic locus notch homolog protein 1-like.	0.865
ENSSGRP00000011869	ENSSGRP00000022074	ENSSGRP00000011869	ENSSGRP00000022074	Protein jagged-1b.	annotation not available	0.780
ENSSGRP00000011869	ENSSGRP00000023188	ENSSGRP00000011869	ENSSGRP00000023188	Protein jagged-1b.	annotation not available	0.796
ENSSGRP00000011869	ENSSGRP00000040054	ENSSGRP00000011869	ENSSGRP00000040054	Protein jagged-1b.	Notch receptor 3.	0.867
ENSSGRP00000011869	ENSSGRP00000048421	ENSSGRP00000011869	ENSSGRP00000048421	Protein jagged-1b.	Neurogenic locus notch homolog protein 1.	0.865
ENSSGRP00000011869	ENSSGRP00000068938	ENSSGRP00000011869	ENSSGRP00000068938	Protein jagged-1b.	Neurogenic locus notch homolog protein 1-like isoform X1.	0.904
ENSSGRP00000011869	ENSSGRP00000083567	ENSSGRP00000011869	ENSSGRP00000083567	Protein jagged-1b.	Neurogenic locus notch homolog protein 2-like isoform X1.	0.867
ENSSGRP00000011869	ENSSGRP00000109007	ENSSGRP00000011869	ENSSGRP00000109007	Protein jagged-1b.	Notch receptor 1b.	0.904
ENSSGRP00000011869	Notch1	ENSSGRP00000011869	ENSSGRP00000091510	Protein jagged-1b.	Neurogenic locus notch homolog protein 1.	0.865