STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm47RNA-binding protein 47. (604 aa)    
Predicted Functional Partners:
FAU
Small subunit ribosomal protein S30e.
   
   0.707
ENSSGRP00000003561
FAU ubiquitin like and ribosomal protein S30 fusion b.
   
   0.707
LOC107567395
Small subunit ribosomal protein S30e.
   
   0.707
LOC107555153
Small subunit ribosomal protein S30e.
   
   0.707
lias
Lipoic acid synthetase.
      
 0.641
ENSSGRP00000006310
C->U-editing enzyme APOBEC-2-like.
     
 0.621
ENSSGRP00000009992
annotation not available
     
 0.621
ENSSGRP00000019922
Probable C->U-editing enzyme APOBEC-2.
     
 0.621
LOC107572363
C->U-editing enzyme APOBEC-2-like.
     
 0.621
LOC107560928
C->U-editing enzyme APOBEC-2-like.
     
 0.621
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.