Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107559677Splicing factor 3B subunit 4-like. (364 aa)    
Predicted Functional Partners:
ENSSGRP00000000245
Splicing factor 3a, subunit 2.
   
 0.999
LOC107552928
Splicing factor 3B subunit 5.
   
 0.995
SF3B2
Splicing factor 3b subunit 2.
   
 0.993
ENSSGRP00000025646
Splicing factor 3b, subunit 2.
   
 0.993
LOC107569635
Splicing factor 3B subunit 1 isoform X1.
    
 0.992
LOC107595847
Splicing factor 3B subunit 1-like isoform X1.
    
 0.992
ENSSGRP00000005385
annotation not available
    
 0.989
sf3b6
Pre-mRNA branch site protein p14.
    
 0.989
LOC107552928-2
Splicing factor 3B subunit 5.
   
 0.989
Snrpa1
U2 small nuclear ribonucleoprotein A.
   
 0.987
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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