Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000011882UBX domain protein 11. (267 aa)    
Predicted Functional Partners:
LOC107553259
UBX domain-containing protein 7-like.
   
 
 0.933
LOC107563300
UBX domain-containing protein 7-like isoform X1.
   
 
 0.933
ENSSGRP00000018631
Zgc:136908.
   
 0.895
ENSSGRP00000046595
Transitional endoplasmic reticulum ATPase-like.
   
 0.895
LOC107594236
Transitional endoplasmic reticulum ATPase-like.
   
 0.895
ENSSGRP00000108061
Valosin containing protein.
   
 0.895
ubxn8
UBX domain-containing protein 8.
    
 0.892
LOC107601482
UBX domain-containing protein 1-like.
   
 0.857
ubxn1
UBX domain-containing protein 1/4.
   
 0.857
LOC107593331
UBX domain-containing protein 6-like.
    
 0.845
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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