STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107559718Ubiquitin carboxyl-terminal hydrolase MINDY-1/2. (523 aa)    
Predicted Functional Partners:
LOC107558416
Ubiquitin-like.
    
   0.777
ENSSGRP00000083272
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.720
ENSSGRP00000106616
annotation not available
   
   0.720
ENSSGRP00000030473
Polyubiquitin-C isoform X1.
    
   0.718
ENSSGRP00000089091
Polyubiquitin-B-like isoform X1.
    
   0.718
LOC107560975
SET domain-containing protein 4-like.
    
 0.599
ENSSGRP00000070581
SET domain containing 4.
    
 0.599
LOC107583493
Histone-lysine N-methyltransferase setd3.
    
 0.599
mmut
Methylmalonyl-CoA mutase, mitochondrial.
    
 0.599
ENSSGRP00000094352
Methylmalonyl-CoA mutase, mitochondrial-like.
    
 0.599
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.