ENSSGRP00000012069 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000012069

Methyltransferase-like protein 17, mitochondrial. (454 aa)

Predicted Functional Partners:

mrps35

0.933

ENSSGRP00000011646

0.928

Mrps10

0.920

ENSSGRP00000021490

0.910

ENSSGRP00000066612

0.910

ENSSGRP00000006447

0.905

mrps16

0.905

LOC107581188

0.886

mrps18c

0.886

LOC107583989

0.886

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006447	ENSSGRP00000011646	ENSSGRP00000006447	ENSSGRP00000011646	annotation not available	annotation not available	0.997
ENSSGRP00000006447	ENSSGRP00000012069	ENSSGRP00000006447	ENSSGRP00000012069	annotation not available	Methyltransferase-like protein 17, mitochondrial.	0.905
ENSSGRP00000006447	ENSSGRP00000021490	ENSSGRP00000006447	ENSSGRP00000021490	annotation not available	28S ribosomal protein S15, mitochondrial-like.	0.997
ENSSGRP00000006447	ENSSGRP00000066612	ENSSGRP00000006447	ENSSGRP00000066612	annotation not available	Mitochondrial ribosomal protein S15.	0.997
ENSSGRP00000006447	LOC107581188	ENSSGRP00000006447	ENSSGRP00000068377	annotation not available	28S ribosomal protein S18a, mitochondrial-like.	0.988
ENSSGRP00000006447	LOC107583989	ENSSGRP00000006447	ENSSGRP00000093312	annotation not available	28S ribosomal protein S18a, mitochondrial-like.	0.988
ENSSGRP00000006447	Mrps10	ENSSGRP00000006447	ENSSGRP00000038252	annotation not available	28S ribosomal protein S10, mitochondrial.	0.997
ENSSGRP00000006447	mrps16	ENSSGRP00000006447	ENSSGRP00000079048	annotation not available	28S ribosomal protein S16, mitochondrial.	0.545
ENSSGRP00000006447	mrps18c	ENSSGRP00000006447	ENSSGRP00000089156	annotation not available	28S ribosomal protein S18c, mitochondrial.	0.996
ENSSGRP00000006447	mrps35	ENSSGRP00000006447	ENSSGRP00000047126	annotation not available	28S ribosomal protein S35, mitochondrial.	0.996
ENSSGRP00000011646	ENSSGRP00000006447	ENSSGRP00000011646	ENSSGRP00000006447	annotation not available	annotation not available	0.997
ENSSGRP00000011646	ENSSGRP00000012069	ENSSGRP00000011646	ENSSGRP00000012069	annotation not available	Methyltransferase-like protein 17, mitochondrial.	0.928
ENSSGRP00000011646	ENSSGRP00000021490	ENSSGRP00000011646	ENSSGRP00000021490	annotation not available	28S ribosomal protein S15, mitochondrial-like.	0.997
ENSSGRP00000011646	ENSSGRP00000066612	ENSSGRP00000011646	ENSSGRP00000066612	annotation not available	Mitochondrial ribosomal protein S15.	0.997
ENSSGRP00000011646	LOC107581188	ENSSGRP00000011646	ENSSGRP00000068377	annotation not available	28S ribosomal protein S18a, mitochondrial-like.	0.990
ENSSGRP00000011646	LOC107583989	ENSSGRP00000011646	ENSSGRP00000093312	annotation not available	28S ribosomal protein S18a, mitochondrial-like.	0.990
ENSSGRP00000011646	Mrps10	ENSSGRP00000011646	ENSSGRP00000038252	annotation not available	28S ribosomal protein S10, mitochondrial.	0.999
ENSSGRP00000011646	mrps16	ENSSGRP00000011646	ENSSGRP00000079048	annotation not available	28S ribosomal protein S16, mitochondrial.	0.997
ENSSGRP00000011646	mrps18c	ENSSGRP00000011646	ENSSGRP00000089156	annotation not available	28S ribosomal protein S18c, mitochondrial.	0.998
ENSSGRP00000011646	mrps35	ENSSGRP00000011646	ENSSGRP00000047126	annotation not available	28S ribosomal protein S35, mitochondrial.	0.999