STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107557724E3 ubiquitin-protein ligase znrf1-like. (250 aa)    
Predicted Functional Partners:
ENSSGRP00000008095
Ubiquitin-conjugating enzyme E2 N-like.
    
 
 0.757
LOC107553972
Ubiquitin-conjugating enzyme E2 N.
    
 
 0.757
LOC107553972-2
Ubiquitin-conjugating enzyme E2 N.
    
 
 0.757
ENSSGRP00000103032
Ubiquitin-conjugating enzyme E2Nb.
    
 
 0.757
ENSSGRP00000097548
F-box protein 40, tandem duplicate 2.
      
 0.487
LOC107563177
Kelch-like protein 22.
      
 0.477
LOC107556236
Kelch-like protein 22.
      
 0.477
LOC107593916
Kelch-like protein 21.
      
 0.455
LOC107591074
Kelch-like protein 21.
      
 0.455
LOC107567413
E3 ubiquitin-protein ligase rnf152-like.
      
 0.450
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.