Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000012117Collagen, type XXVIII, alpha 2a. (872 aa)    
Predicted Functional Partners:
LOC107587590
Myosin-binding protein H-like isoform X1.
    
 0.652
ENSSGRP00000082755
annotation not available
    
 0.542
ENSSGRP00000002218
Myosin binding protein Ha.
      
 0.535
ENSSGRP00000098057
Myosin binding protein Ha.
      
 0.535
ENSSGRP00000031174
Uncharacterized family 31 glucosidase KIAA1161-like.
    
 
 0.524
LOC107584535
Uncharacterized family 31 glucosidase KIAA1161-like.
    
 
 0.524
LOC107561338
Synaptonemal complex protein SC65-like.
     
 0.520
LOC107563349
Synaptonemal complex protein SC65-like.
     
 0.520
PPIB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
    
 0.518
LOC107560023
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
    
 0.518
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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