Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107592227RRNA 2'-O-methyltransferase fibrillarin-like. (312 aa)    
Predicted Functional Partners:
ENSSGRP00000031192
Nucleolar protein 56-like isoform X1.
   
 0.998
nop58
Nucleolar protein 58 isoform X1.
   
 0.998
ENSSGRP00000095040
Nucleolar protein 56-like.
   
 0.998
ENSSGRP00000107996
annotation not available
   
 0.997
ENSSGRP00000078700
Dyskeratosis congenita 1, dyskerin.
   
 0.994
LOC107581884
H/ACA ribonucleoprotein complex subunit 4-like.
   
 0.994
rrp9
U3 small nucleolar RNA-interacting protein 2 isoform X1.
   
 0.993
ENSSGRP00000074775
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 0.993
LOC107590037
H/ACA ribonucleoprotein complex subunit 2-like protein.
   
 0.991
LOC107569189
U4/U6 small nuclear ribonucleoprotein SNU13.
   
 0.991
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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