STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000012230General transcription factor IIE, polypeptide 1, alpha. (421 aa)    
Predicted Functional Partners:
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.999
polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
 0.998
LOC107548363
Transcription initiation factor TFIIE subunit beta.
   
 0.996
ENSSGRP00000055857
General transcription factor IIE, polypeptide 2, beta.
   
 0.996
ENSSGRP00000060780
TFIIH basal transcription factor complex helicase XPB subunit-like.
   
 0.996
ENSSGRP00000107977
LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPB subunit-like.
   
 0.996
ENSSGRP00000025230
General transcription factor IIH, polypeptide 4.
   
 0.995
LOC107595044
General transcription factor IIH subunit 2-like.
   
 0.995
LOC107584301
General transcription factor IIH subunit 4-like.
   
 0.995
ENSSGRP00000046505
General transcription factor IIF, polypeptide 1.
    
 0.995
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.