LOC107558141 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107558141

Protein phosphatase 1 regulatory inhibitor subunit 16B-like. (510 aa)

Predicted Functional Partners:

LOC107583611

0.750

ENSSGRP00000033486

0.750

ENSSGRP00000041627

0.750

LOC107582864

0.750

LOC107563994

0.725

LOC107563994-2

0.725

LOC107567955

0.725

LOC107556769

0.725

ENSSGRP00000103778

0.725

LOC107551850

0.725

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000033486	ENSSGRP00000103778	ENSSGRP00000033486	ENSSGRP00000103778	annotation not available	annotation not available	0.611
ENSSGRP00000033486	LOC107551850	ENSSGRP00000033486	ENSSGRP00000104400	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform-like.	0.615
ENSSGRP00000033486	LOC107556769	ENSSGRP00000033486	ENSSGRP00000071655	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform-like isoform X1.	0.615
ENSSGRP00000033486	LOC107558141	ENSSGRP00000033486	ENSSGRP00000017847	annotation not available	Protein phosphatase 1 regulatory inhibitor subunit 16B-like.	0.750
ENSSGRP00000033486	LOC107563994	ENSSGRP00000033486	ENSSGRP00000001046	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform.	0.615
ENSSGRP00000033486	LOC107563994-2	ENSSGRP00000033486	ENSSGRP00000008478	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform.	0.614
ENSSGRP00000033486	LOC107567955	ENSSGRP00000033486	ENSSGRP00000030875	annotation not available	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B isoform X1.	0.611
ENSSGRP00000041627	ENSSGRP00000103778	ENSSGRP00000041627	ENSSGRP00000103778	annotation not available	annotation not available	0.704
ENSSGRP00000041627	LOC107551850	ENSSGRP00000041627	ENSSGRP00000104400	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform-like.	0.619
ENSSGRP00000041627	LOC107556769	ENSSGRP00000041627	ENSSGRP00000071655	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform-like isoform X1.	0.618
ENSSGRP00000041627	LOC107558141	ENSSGRP00000041627	ENSSGRP00000017847	annotation not available	Protein phosphatase 1 regulatory inhibitor subunit 16B-like.	0.750
ENSSGRP00000041627	LOC107563994	ENSSGRP00000041627	ENSSGRP00000001046	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform.	0.619
ENSSGRP00000041627	LOC107563994-2	ENSSGRP00000041627	ENSSGRP00000008478	annotation not available	Serine/threonine-protein phosphatase alpha-2 isoform.	0.619
ENSSGRP00000041627	LOC107567955	ENSSGRP00000041627	ENSSGRP00000030875	annotation not available	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B isoform X1.	0.619
ENSSGRP00000103778	ENSSGRP00000033486	ENSSGRP00000103778	ENSSGRP00000033486	annotation not available	annotation not available	0.611
ENSSGRP00000103778	ENSSGRP00000041627	ENSSGRP00000103778	ENSSGRP00000041627	annotation not available	annotation not available	0.704
ENSSGRP00000103778	LOC107558141	ENSSGRP00000103778	ENSSGRP00000017847	annotation not available	Protein phosphatase 1 regulatory inhibitor subunit 16B-like.	0.725
ENSSGRP00000103778	LOC107582864	ENSSGRP00000103778	ENSSGRP00000050592	annotation not available	Serine/threonine-protein phosphatase PP1-beta catalytic subunit.	0.615
ENSSGRP00000103778	LOC107583611	ENSSGRP00000103778	ENSSGRP00000032671	annotation not available	Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.	0.615
LOC107551850	ENSSGRP00000033486	ENSSGRP00000104400	ENSSGRP00000033486	Serine/threonine-protein phosphatase alpha-2 isoform-like.	annotation not available	0.615