STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107583845Cleavage and polyadenylation specificity factor subunit 5-like. (194 aa)    
Predicted Functional Partners:
ENSSGRP00000027190
Pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.988
LOC107555887
Cleavage and polyadenylation specificity factor subunit 6.
   
 0.976
ENSSGRP00000111552
Cleavage and polyadenylation specific factor 6.
   
 0.976
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.935
LOC107592759
Cleavage and polyadenylation specificity factor subunit 4-like.
    
 0.935
YTHDC2
Probable ATP-dependent RNA helicase YTHDC2.
   
 0.918
ENSSGRP00000018020
annotation not available
   
 0.918
ENSSGRP00000097029
Cleavage and polyadenylation specificity factor subunit 5.
  
  
 
0.900
LOC107550069
Cleavage and polyadenylation specificity factor subunit 1-like.
   
 
 0.894
LOC107551645
Pre-mRNA cleavage complex 2 protein Pcf11-like.
    
 0.887
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.