STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107566699DNA cross-link repair 1A protein-like. (762 aa)    
Predicted Functional Partners:
LOC107550069
Cleavage and polyadenylation specificity factor subunit 1-like.
   
 0.955
ENSSGRP00000027190
Pre-mRNA 3'-end-processing factor FIP1-like.
    
 0.935
tmem169
X-ray repair cross-complementing protein 5-like.
    
 0.935
ints7
LOW QUALITY PROTEIN: integrator complex subunit 7-like.
    
 0.871
ENSSGRP00000032432
annotation not available
   
 0.868
Fancm
Fanconi anemia group M protein.
   
 0.868
LOC107554059
X-ray repair cross-complementing protein 6-like.
   
 0.862
ENSSGRP00000105234
X-ray repair cross-complementing protein 6-like.
   
 0.862
ENSSGRP00000065370
Interphotoreceptor matrix proteoglycan 2-like.
   
 0.860
ENSSGRP00000092172
LOW QUALITY PROTEIN: integrator complex subunit 4-like.
   
 0.860
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.