LOC107582847 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107582847

Potassium voltage-gated channel subfamily H member 1-like isoform X1. (968 aa)

Predicted Functional Partners:

LOC107560343

0.556

KCNAB3

0.556

LOC107565944

0.539

ENSSGRP00000005422

0.538

ENSSGRP00000020148

0.538

ENSSGRP00000023041

0.538

ENSSGRP00000029333

0.538

ENSSGRP00000050766

0.538

LOC107592856

0.538

LOC107582417

0.538

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005422	LOC107582847	ENSSGRP00000005422	ENSSGRP00000049914	Potassium voltage-gated channel Shaker-related subfamily A, beta member 1.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
ENSSGRP00000020148	LOC107582847	ENSSGRP00000020148	ENSSGRP00000049914	annotation not available	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
ENSSGRP00000023041	LOC107582847	ENSSGRP00000023041	ENSSGRP00000049914	annotation not available	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
ENSSGRP00000029333	LOC107582847	ENSSGRP00000029333	ENSSGRP00000049914	annotation not available	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
ENSSGRP00000050766	LOC107582847	ENSSGRP00000050766	ENSSGRP00000049914	Potassium voltage-gated channel, shaker-related subfamily, beta member 1 a.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
KCNAB3	LOC107582847	ENSSGRP00000066529	ENSSGRP00000049914	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.556
LOC107560343	LOC107582847	ENSSGRP00000026618	ENSSGRP00000049914	Potassium voltage-gated channel Shaker-related subfamily A, beta member 3.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.556
LOC107565944	LOC107582847	ENSSGRP00000100238	ENSSGRP00000049914	Calcium/calmodulin-dependent serine protein kinase.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.539
LOC107582417	LOC107582847	ENSSGRP00000079730	ENSSGRP00000049914	Potassium voltage-gated channel Shaker-related subfamily A, beta member 2.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538
LOC107582847	ENSSGRP00000005422	ENSSGRP00000049914	ENSSGRP00000005422	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel Shaker-related subfamily A, beta member 1.	0.538
LOC107582847	ENSSGRP00000020148	ENSSGRP00000049914	ENSSGRP00000020148	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	annotation not available	0.538
LOC107582847	ENSSGRP00000023041	ENSSGRP00000049914	ENSSGRP00000023041	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	annotation not available	0.538
LOC107582847	ENSSGRP00000029333	ENSSGRP00000049914	ENSSGRP00000029333	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	annotation not available	0.538
LOC107582847	ENSSGRP00000050766	ENSSGRP00000049914	ENSSGRP00000050766	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel, shaker-related subfamily, beta member 1 a.	0.538
LOC107582847	KCNAB3	ENSSGRP00000049914	ENSSGRP00000066529	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.556
LOC107582847	LOC107560343	ENSSGRP00000049914	ENSSGRP00000026618	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel Shaker-related subfamily A, beta member 3.	0.556
LOC107582847	LOC107565944	ENSSGRP00000049914	ENSSGRP00000100238	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Calcium/calmodulin-dependent serine protein kinase.	0.539
LOC107582847	LOC107582417	ENSSGRP00000049914	ENSSGRP00000079730	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel Shaker-related subfamily A, beta member 2.	0.538
LOC107582847	LOC107592856	ENSSGRP00000049914	ENSSGRP00000057501	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	Potassium voltage-gated channel Shaker-related subfamily A, beta member 2.	0.538
LOC107592856	LOC107582847	ENSSGRP00000057501	ENSSGRP00000049914	Potassium voltage-gated channel Shaker-related subfamily A, beta member 2.	Potassium voltage-gated channel subfamily H member 1-like isoform X1.	0.538