STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107589056Zinc finger protein 513-like isoform X1. (549 aa)    
Predicted Functional Partners:
prpf4
U4/U6 small nuclear ribonucleoprotein PRP4.
    
 
 0.469
LOC107549965
Uncharacterized protein C1orf194 homolog.
      
 0.451
lypd6
Ly6/PLAUR domain-containing protein 6.
     
 0.445
ENSSGRP00000110792
annotation not available
     
 0.445
ENSSGRP00000016903
Sorting nexin 19b.
      
 0.444
LOC107597509
Sorting nexin-19-like isoform X1.
      
 0.444
ENSSGRP00000082485
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
     
 0.419
LOC107602857
U5 small nuclear ribonucleoprotein 200 kDa helicase.
     
 0.419
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.