STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107553043Protein phosphatase PTC7 homolog. (297 aa)    
Predicted Functional Partners:
ENSSGRP00000007912
Zinc finger protein 239-like.
     
 0.655
ENSSGRP00000030736
Mitochondrial methionyl-tRNA formyltransferase.
  
   0.535
LOC107596429
Methionyl-tRNA formyltransferase, mitochondrial-like.
  
   0.535
stk16
Serine/threonine-protein kinase 16 isoform X1.
   
  
 0.497
ENSSGRP00000009122
annotation not available
   
  
 0.497
LOC107561400
Mediator of RNA polymerase II transcription subunit 7-like.
    
   0.493
zer1
Zyg-11 protein homolog.
      
 0.456
ENSSGRP00000022266
annotation not available
      
 0.456
LOC107559637
Pyruvate dehydrogenase [acetyl-transferring]-phosphatase 2, mitochondrial-like.
    
 
 0.431
LOC107600002
Pyruvate dehydrogenase [acetyl-transferring]-phosphatase 2, mitochondrial-like.
    
 
 0.431
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.