LOC107560538 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107560538

SAGA-associated factor 11. (163 aa)

Predicted Functional Partners:

LOC107551183

0.962

LOC107600664

0.962

ENSSGRP00000015993

0.952

ENSSGRP00000032764

0.952

ENSSGRP00000012988

0.946

ENSSGRP00000067675

0.946

tada3

0.944

ENSSGRP00000106261

0.944

LOC107588503

0.932

LOC107566933

0.932

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000012988	ENSSGRP00000015993	ENSSGRP00000012988	ENSSGRP00000015993	Transformation/transcription domain-associated protein-like.	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	0.989
ENSSGRP00000012988	ENSSGRP00000032764	ENSSGRP00000012988	ENSSGRP00000032764	Transformation/transcription domain-associated protein-like.	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	0.989
ENSSGRP00000012988	ENSSGRP00000106261	ENSSGRP00000012988	ENSSGRP00000106261	Transformation/transcription domain-associated protein-like.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.990
ENSSGRP00000012988	LOC107551183	ENSSGRP00000012988	ENSSGRP00000027062	Transformation/transcription domain-associated protein-like.	Transcription and mRNA export factor ENY2-like.	0.981
ENSSGRP00000012988	LOC107560538	ENSSGRP00000012988	ENSSGRP00000065492	Transformation/transcription domain-associated protein-like.	SAGA-associated factor 11.	0.946
ENSSGRP00000012988	LOC107566933	ENSSGRP00000012988	ENSSGRP00000038176	Transformation/transcription domain-associated protein-like.	Transcription initiation factor TFIID subunit 12-like.	0.992
ENSSGRP00000012988	LOC107588503	ENSSGRP00000012988	ENSSGRP00000024474	Transformation/transcription domain-associated protein-like.	Transcription initiation factor TFIID subunit 12-like.	0.992
ENSSGRP00000012988	LOC107600664	ENSSGRP00000012988	ENSSGRP00000050714	Transformation/transcription domain-associated protein-like.	Enhancer of yellow 2 transcription factor.	0.981
ENSSGRP00000012988	tada3	ENSSGRP00000012988	ENSSGRP00000067960	Transformation/transcription domain-associated protein-like.	Transcriptional adapter 3.	0.990
ENSSGRP00000015993	ENSSGRP00000012988	ENSSGRP00000015993	ENSSGRP00000012988	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transformation/transcription domain-associated protein-like.	0.989
ENSSGRP00000015993	ENSSGRP00000067675	ENSSGRP00000015993	ENSSGRP00000067675	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transformation/transcription domain-associated protein-like.	0.989
ENSSGRP00000015993	ENSSGRP00000106261	ENSSGRP00000015993	ENSSGRP00000106261	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.989
ENSSGRP00000015993	LOC107551183	ENSSGRP00000015993	ENSSGRP00000027062	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transcription and mRNA export factor ENY2-like.	0.992
ENSSGRP00000015993	LOC107560538	ENSSGRP00000015993	ENSSGRP00000065492	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	SAGA-associated factor 11.	0.952
ENSSGRP00000015993	LOC107566933	ENSSGRP00000015993	ENSSGRP00000038176	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transcription initiation factor TFIID subunit 12-like.	0.978
ENSSGRP00000015993	LOC107588503	ENSSGRP00000015993	ENSSGRP00000024474	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transcription initiation factor TFIID subunit 12-like.	0.978
ENSSGRP00000015993	LOC107600664	ENSSGRP00000015993	ENSSGRP00000050714	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Enhancer of yellow 2 transcription factor.	0.992
ENSSGRP00000015993	tada3	ENSSGRP00000015993	ENSSGRP00000067960	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transcriptional adapter 3.	0.989
ENSSGRP00000032764	ENSSGRP00000012988	ENSSGRP00000032764	ENSSGRP00000012988	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transformation/transcription domain-associated protein-like.	0.989
ENSSGRP00000032764	ENSSGRP00000067675	ENSSGRP00000032764	ENSSGRP00000067675	Ubiquitin carboxyl-terminal hydrolase 22/27/51.	Transformation/transcription domain-associated protein-like.	0.989