STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps4bVacuolar protein sorting-associated protein 4B. (548 aa)    
Predicted Functional Partners:
ENSSGRP00000065942
Vacuolar protein sorting-associated protein VTA1 homolog.
   
 0.993
VTA1
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
   
 0.993
ENSSGRP00000006707
Charged multivesicular body protein 1b-like.
   
 0.978
chmp1a
Charged multivesicular body protein 1a.
   
 0.978
LOC107558945
Charged multivesicular body protein 5-like.
   
 0.978
LOC107558965
Charged multivesicular body protein 5.
   
 0.978
chmp1b
Charged multivesicular body protein 1b.
   
 0.978
LOC107552765
Charged multivesicular body protein 2A.
    
 0.934
LOC107582752
Charged multivesicular body protein 2a-like.
    
 0.934
ENSSGRP00000013444
IST1 factor associated with ESCRT-III.
   
 0.930
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.