STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107550266N-acetylmuramoyl-L-alanine amidase-like. (461 aa)    
Predicted Functional Partners:
ATP6
F-type H+-transporting ATPase subunit a.
      
 0.622
LOC107566578
Splicing factor, arginine/serine-rich 17.
      
 0.610
LOC107587949
Protein PET100 homolog, mitochondrial-like.
      
 0.519
ENSSGRP00000007386
MIT, microtubule interacting and transport, domain containing 1.
      
 0.491
Mitd1
LOW QUALITY PROTEIN: MIT domain-containing protein 1.
      
 0.491
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.