STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000080189Zinc finger, CCHC domain containing 9. (197 aa)    
Predicted Functional Partners:
LOC107584588
RNA exonuclease 4-like isoform X1.
   
   0.803
rexo4
RNA exonuclease 4.
   
   0.803
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 
 0.752
rbm34
RNA binding motif protein 34.
   
 
 0.694
LOC107571110
Superkiller viralicidic activity 2-like 2 isoform X1.
   
 
 0.657
ENSSGRP00000052492
Mtr4 exosome RNA helicase.
   
 
 0.657
ENSSGRP00000064194
NIN1 (RPN12) binding protein 1 homolog.
   
    0.603
Nob1
RNA-binding protein NOB1.
   
    0.603
mpnd
MPN domain-containing protein.
   
 
 0.600
ENSSGRP00000006084
annotation not available
   
 
 0.575
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.