STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107590391tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like. (476 aa)    
Predicted Functional Partners:
LOC107600515
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
  
 0.889
LOC107567767
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
  
 0.889
LOC107569008
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.873
ENSSGRP00000108769
Bifunctional glutamate/proline--tRNA ligase-like isoform X1.
  
 
 0.873
ENSSGRP00000013069
UTP3 small subunit processome component.
   
    0.857
ENSSGRP00000015598
WD repeat domain 36.
   
   0.841
ENSSGRP00000042739
U3 small nucleolar RNA-associated protein 21.
   
   0.841
tbl3
U3 small nucleolar RNA-associated protein 13.
   
    0.811
ddx56
Probable ATP-dependent RNA helicase DDX56.
  
 
 0.801
rpf2
Ribosome production factor 2 homolog.
   
    0.801
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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