STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107567592Lysine-specific demethylase phf2 isoform X1. (1066 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1 isoform X1.
    
 0.804
Arid5b
AT-rich interactive domain-containing protein 5B.
     
 0.775
ENSSGRP00000066764
AT-rich interactive domain-containing protein 5B-like.
     
 0.775
Topbp1
DNA topoisomerase 2-binding protein 1 isoform X1.
    
 
 0.582
ENSSGRP00000002243
annotation not available
    
 0.578
ENSSGRP00000002615
annotation not available
    
 0.578
ENSSGRP00000003037
Histone H3.3-like.
    
 0.578
ENSSGRP00000007060
Histone H3.
    
 0.578
ENSSGRP00000007128
annotation not available
    
 0.578
ENSSGRP00000007788
annotation not available
    
 0.578
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.