STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC13579.1Nuclease-related domain-containing protein. (306 aa)    
Predicted Functional Partners:
SFC13615.1
Signal transduction histidine kinase.
       0.486
SFC13640.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.486
SFC12622.1
Conserved TM helix.
  
     0.457
SFC26747.1
YrhK-like protein.
  
     0.452
SFC15281.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.449
SFC49893.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Alkalibacterium subtropicum
NCBI taxonomy Id: 753702
Other names: A. subtropicum, Alkalibacterium sp. O24-2, Alkalibacterium sp. O25-2, Alkalibacterium subtropicum Ishikawa et al. 2011, DSM 23664, NBRC 107172, strain O24-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.