STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_0123PFAM: microcompartments protein; KEGG: nwi:Nwi_1980 carboxysome structural peptide CsoS1B. (112 aa)    
Predicted Functional Partners:
Tint_0119
Carboxysome peptide A; KEGG: net:Neut_0808 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; TIGRFAM: carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 
 0.859
Tint_0120
Carboxysome peptide B; KEGG: nha:Nham_4337 microcompartments protein; TIGRFAM: carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 
 0.856
Tint_0130
PFAM: microcompartments protein; KEGG: net:Neut_0817 microcompartments protein.
 
 
 
 0.814
Tint_0125
KEGG: nha:Nham_4341 hypothetical protein.
 
     0.784
Tint_0124
PFAM: Ferritin Dps family protein; KEGG: net:Neut_0812 ferritin, Dps family protein.
       0.696
Tint_0126
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_4342 cobyrinic acid a,c-diamide synthase.
       0.689
Tint_0127
KEGG: nha:Nham_4343 hypothetical protein.
       0.686
Tint_0118
KEGG: nha:Nham_4335 carboxysome shell polypeptide, CsoS3; TIGRFAM: carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase.
 
   
 0.631
Tint_0117
KEGG: nwi:Nwi_1985 carboxysome shell protein CsoS2.
 
   
 0.606
csoS1A
KEGG: net:Neut_0811 microcompartments protein; PFAM: microcompartments protein; SMART: microcompartments protein.
 
    
0.551
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.