STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_0230KEGG: bam:Bamb_2981 8-amino-7-oxononanoate synthase. (53 aa)    
Predicted Functional Partners:
Tint_0229
KEGG: ctt:CtCNB1_2177 drug resistance transporter, EmrB/QacA; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.
       0.773
Tint_0231
PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_1445 secretion protein HlyD family protein.
       0.773
Tint_0228
Lipid A 3-O-deacylase-related protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
       0.664
Tint_0225
PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_0017 HlyD family secretion protein.
       0.615
Tint_0226
PFAM: protein of unknown function DUF1656; KEGG: pca:Pcar_2910 hypothetical protein.
       0.615
Tint_0227
PFAM: Fusaric acid resistance protein conserved region; KEGG: abo:ABO_0015 hypothetical protein.
       0.615
Tint_0232
KEGG: eba:ebA3445 putative outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
       0.605
Tint_0233
KEGG: eba:ebA3444 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.593
Tint_0224
PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4091 phosphoglycerate mutase.
       0.541
Tint_0223
KEGG: bte:BTH_I3174 hypothetical protein.
       0.463
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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