STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_0287KEGG: eba:ebA4187 subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenase. (508 aa)    
Predicted Functional Partners:
Tint_0288
Hypothetical protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rme:Rmet_4666 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 0.999
Tint_1703
Hypothetical protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hna:Hneap_1789 NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 0.999
Tint_0283
Hypothetical protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4193 hydrogenase 4 subunit B.
 
 
 0.998
Tint_0286
Hypothetical protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rfr:Rfer_3289 hydrogenase 4 subunit F.
 
 
 0.998
Tint_0284
KEGG: rme:Rmet_4670 respiratory-chain NADH dehydrogenase, subunit 1.
 
 
 0.997
Tint_0285
KEGG: rfr:Rfer_3290 hydrogenase 4 membrane component.
 
  
 0.996
Tint_1701
Hypothetical protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: hna:Hneap_1791 NADH/ubiquinone/plastoquinone (complex I).
 
 
 0.994
Tint_1704
Hypothetical protein; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: hna:Hneap_1788 NADH/ubiquinone/plastoquinone (complex I).
 
 
 0.994
Tint_1699
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: hna:Hneap_1793 respiratory-chain NADH dehydrogenase subunit 1.
 
 
 0.989
Tint_1700
KEGG: hna:Hneap_1792 hydrogenase 4 membrane component (E).
 
  
 0.985
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.