Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Tint_0331KEGG: gur:Gura_1405 AbrB family transcriptional regulator; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein. (68 aa)    
Predicted Functional Partners:
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.761
Tint_2207
KEGG: spe:Spro_4037 hypothetical protein.
    
 0.573
Tint_1952
KEGG: vei:Veis_3672 hypothetical protein.
 
  
 0.549
Tint_1550
KEGG: noc:Noc_0284 hypothetical protein.
 
  
 0.540
Tint_1551
KEGG: reh:H16_B0403 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.504
Tint_0332
KEGG: mpt:Mpe_A2084 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.480
Tint_1951
Transcriptional regulator, XRE family; KEGG: vei:Veis_3671 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.480
Tint_0333
KEGG: rpf:Rpic12D_3359 thioredoxin domain protein.
       0.460
Tint_0429
KEGG: mes:Meso_4226 transcriptional modulator of MazE/toxin, MazF.
    
 0.457
Tint_3019
KEGG: vap:Vapar_4245 addiction module antidote; TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein.
    
 0.449
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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