Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tint_0664PFAM: Pilus assembly protein PilP; KEGG: mpt:Mpe_A3110 fimbrial assembly protein. (190 aa)    
Predicted Functional Partners:
Tint_0665
Type IV pilus secretin PilQ; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
 
 
 0.996
Tint_0662
PFAM: Fimbrial assembly family protein; KEGG: lch:Lcho_3406 fimbrial assembly family protein.
 
  
 0.995
Tint_0663
PFAM: Pilus assembly protein PilO; KEGG: vap:Vapar_1142 pilus assembly protein PilO.
 
  
 0.993
Tint_0661
KEGG: vap:Vapar_1140 type IV pilus assembly protein PilM; manually curated; TIGRFAM: type IV pilus assembly protein PilM.
 
  
 0.966
Tint_1480
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
  
   
 0.852
Tint_0412
PilE protein; KEGG: hna:Hneap_0020 PilE protein.
  
  
 0.793
Tint_1776
KEGG: vap:Vapar_2185 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein.
  
   
 0.787
Tint_0087
PFAM: Peptidoglycan-binding lysin domain; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
  
     0.773
Tint_2327
FimV N-terminal domain protein; KEGG: pol:Bpro_3613 putative transmembrane protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: Peptidoglycan-binding lysin domain.
  
  
 0.764
Tint_0769
PFAM: protein of unknown function DUF58; KEGG: mpt:Mpe_A1244 hypothetical protein.
 
     0.758
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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