STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_0909PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: lch:Lcho_1248 deoxyribodipyrimidine photo-lyase. (493 aa)    
Predicted Functional Partners:
Tint_0911
PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: lch:Lcho_1250 deoxyribodipyrimidine photolyase-related protein.
 
   
 0.949
Tint_0912
PFAM: DNA photolyase FAD-binding; KEGG: lch:Lcho_1249 deoxyribodipyrimidine photolyase-like protein.
 
     0.946
Tint_0910
PFAM: Uncharacterised conserved protein UCP037205; KEGG: lch:Lcho_1251 hypothetical protein.
 
     0.913
Tint_0913
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tgr:Tgr7_1395 short-chain dehydrogenase/reductase SDR.
 
   
 0.804
Tint_0908
KEGG: har:HEAR2983 para-aminobenzoate synthase PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV.
     
 0.611
Tint_1063
DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: rfr:Rfer_2572 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein.
 
   
 0.491
Tint_2500
Regulatory protein MerR; KEGG: mpt:Mpe_A0238 hypothetical protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
  
 0.480
Tint_0615
PFAM: Protein of unknown function DUF2309; KEGG: afe:Lferr_1358 hypothetical protein; Belongs to the UPF0753 family.
  
     0.470
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.452
Tint_2504
PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein.
 
    0.426
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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