STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_1007KEGG: rpi:Rpic_2468 putative transmembrane protein. (456 aa)    
Predicted Functional Partners:
Tint_1009
KEGG: aav:Aave_1039 putative transmembrane protein.
 
   
 0.954
Tint_1010
Hypothetical protein; KEGG: lch:Lcho_0019 putative transmembrane protein.
 
   
 0.954
Tint_1008
PFAM: glycosyl transferase group 1; KEGG: rpi:Rpic_2469 glycosyl transferase group 1.
 
   
 0.951
Tint_1011
KEGG: lch:Lcho_0018 putative lipoprotein.
 
   
 0.934
Tint_1015
PFAM: TM1410 hypothetical-related protein; KEGG: lch:Lcho_0016 polysaccharide deacetylase.
 
   
 0.873
Tint_1014
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; KEGG: lch:Lcho_0017 TPR repeat-containing protein.
 
   
 0.860
Tint_1012
KEGG: reh:H16_B2203 hypothetical protein.
     
 0.596
Tint_1004
KEGG: tmz:Tmz1t_0854 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain.
       0.566
Tint_1005
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase.
       0.566
Tint_1006
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tmz:Tmz1t_0852 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.566
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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