Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tint_1237KEGG: mms:mma_1452 LuxR family DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver. (125 aa)    
Predicted Functional Partners:
Tint_1239
KEGG: mms:mma_1453 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.859
Tint_0193
Histidine kinase; KEGG: ppg:PputGB1_0440 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein.
 
 
 0.735
Tint_1236
KEGG: pst:PSPTO_0916 methyl-accepting chemotaxis protein, putative; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
       0.597
Tint_2885
KEGG: lch:Lcho_3952 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver.
  
     0.592
Tint_1238
Two component transcriptional regulator, LuxR family; KEGG: sat:SYN_01953 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
 
    
0.588
Tint_2474
KEGG: dac:Daci_1106 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
  
     0.579
Tint_2825
KEGG: oca:OCAR_7493 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.548
Tint_1235
KEGG: pst:PSPTO_0915 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver.
  
   0.510
Tint_1232
KEGG: app:CAP2UW1_3442 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
     0.488
Tint_1234
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: asa:ASA_3265 sulfate transporter/antisigma-factor antagonist STAS.
  
    0.486
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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