STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (132 aa)    
Predicted Functional Partners:
Tint_1546
KEGG: afr:AFE_1781 transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
 
   
 0.952
Tint_1549
PFAM: Putative helicase A859L; KEGG: pau:PA14_15600 hypothetical protein.
       0.780
Tint_1548
KEGG: bpa:BPP1264 hypothetical protein.
       0.775
Tint_0331
KEGG: gur:Gura_1405 AbrB family transcriptional regulator; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
 
   
 0.760
Tint_1550
KEGG: noc:Noc_0284 hypothetical protein.
 
   
 0.757
Tint_1551
KEGG: reh:H16_B0403 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.757
Tint_0266
PFAM: SpoVT/AbrB domain protein; KEGG: eba:ebD16 hypothetical protein.
  
 
 0.726
Tint_1545
KEGG: xcv:XCV2165 putative DNA methylase.
       0.573
Tint_1929
Hypothetical protein; KEGG: geo:Geob_0072 cell wall/surface repeat protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.529
Tint_1208
TIGRFAM: flagellar protein FliS; KEGG: azo:azo2707 flagellar protein FliS.
  
     0.433
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.