STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_1600PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bvi:Bcep1808_2317 acyl-CoA dehydrogenase domain-containing protein. (394 aa)    
Predicted Functional Partners:
Tint_1595
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: cti:RALTA_A1467 multifunctional: 3-hydroxybutyryl-CoA epimerase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, enoyl-CoA hydratase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal).
 
 0.964
Tint_1601
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bpe:BP0652 acyl-CoA dehydrogenase.
     0.961
Tint_2601
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A0461 3-hydroxyacyl-CoA dehydrogenase.
  
 0.832
Tint_1602
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gyc:GYMC61_0742 alcohol dehydrogenase zinc-binding domain protein.
  
 
 0.731
Tint_1283
PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_3306 acyl-CoA synthetase.
  
 
  0.727
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 0.705
Tint_0688
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like.
  
     0.701
Tint_1603
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acr:Acry_2115 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.696
Tint_1352
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: vap:Vapar_3373 electron transfer flavoprotein alpha subunit.
 
 
 0.687
Tint_1604
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcm:Bcenmc03_1321 alcohol dehydrogenase.
 
 
 0.677
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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