Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tint_1963KEGG: bgl:bglu_1g12000 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Tint_0498
KEGG: avi:Avi_3782 DNA-damage-inducible protein; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin.
  
 0.703
Tint_1964
Transcriptional regulator, XRE family; KEGG: bpm:BURPS1710b_1676 GP68; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
     
 0.613
Tint_1551
KEGG: reh:H16_B0403 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
   
 0.572
Tint_1951
Transcriptional regulator, XRE family; KEGG: vei:Veis_3671 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
   
 0.572
Tint_2207
KEGG: spe:Spro_4037 hypothetical protein.
    
 0.456
Tint_1960
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pna:Pnap_2510 conjugal transfer protein TrbG/VirB9/CagX.
       0.446
Tint_1961
Hypothetical protein; KEGG: dba:Dbac_3057 acriflavin resistance protein.
       0.446
Tint_1962
PFAM: Conjugal transfer protein; KEGG: pna:Pnap_2509 conjugal transfer protein.
       0.446
Tint_1959
PFAM: conjugation TrbI family protein; KEGG: pna:Pnap_2511 conjugation TrbI family protein.
       0.441
Tint_0429
KEGG: mes:Meso_4226 transcriptional modulator of MazE/toxin, MazF.
    
 0.424
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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