Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tint_1964Transcriptional regulator, XRE family; KEGG: bpm:BURPS1710b_1676 GP68; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (122 aa)    
Predicted Functional Partners:
Tint_1965
PFAM: protein of unknown function DUF497; KEGG: xfa:XF1562 hypothetical protein.
 
     0.636
Tint_1963
KEGG: bgl:bglu_1g12000 hypothetical protein.
     
 0.613
Tint_1966
KEGG: xfn:XfasM23_1054 hypothetical protein.
 
     0.518
Tint_2432
KEGG: gem:GM21_0023 hypothetical protein.
    
 
 0.407
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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