STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_1977KEGG: ppf:Pput_3508 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (98 aa)    
Predicted Functional Partners:
Tint_1976
KEGG: vei:Veis_0672 HipA domain-containing protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
 
 0.827
Tint_1978
PFAM: TRAG family protein; KEGG: pna:Pnap_2530 TraG family protein.
       0.645
Tint_1975
PFAM: Peptidase S26, conserved region; KEGG: app:CAP2UW1_4642 hypothetical protein.
       0.581
Tint_2432
KEGG: gem:GM21_0023 hypothetical protein.
    
 
 0.452
Tint_1971
KEGG: pna:Pnap_2503 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
       0.429
Tint_1972
PFAM: Conjugal transfer TrbD family protein; KEGG: pna:Pnap_2502 conjugal transfer TrbD family protein.
       0.429
Tint_1973
Hypothetical protein; KEGG: pap:PSPA7_4161 putative transcriptional regulator.
       0.429
Tint_1974
PFAM: Conjugal transfer protein TrbC; KEGG: pna:Pnap_2501 conjugal transfer protein TrbC.
       0.429
Tint_1979
PFAM: domain of unknown function DUF1738; KEGG: pna:Pnap_2529 hypothetical protein.
       0.411
Tint_1980
KEGG: glo:Glov_2643 peptidase S9 prolyl oligopeptidase active site domain protein.
       0.411
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.