Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tint_1978PFAM: TRAG family protein; KEGG: pna:Pnap_2530 TraG family protein. (643 aa)    
Predicted Functional Partners:
Tint_1971
KEGG: pna:Pnap_2503 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
  
 0.895
Tint_1979
PFAM: domain of unknown function DUF1738; KEGG: pna:Pnap_2529 hypothetical protein.
 
     0.871
Tint_1972
PFAM: Conjugal transfer TrbD family protein; KEGG: pna:Pnap_2502 conjugal transfer TrbD family protein.
 
     0.844
Tint_1994
P-type conjugative transfer ATPase TrbB; KEGG: pna:Pnap_2497 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; DEAD/DEAH box helicase domain protein.
 
   
 0.834
Tint_1935
PFAM: conjugation TrbI family protein; KEGG: pna:Pnap_2511 conjugation TrbI family protein.
 
 
 
 0.832
Tint_1959
PFAM: conjugation TrbI family protein; KEGG: pna:Pnap_2511 conjugation TrbI family protein.
 
 
 
 0.832
Tint_1968
P-type conjugative transfer protein TrbL; KEGG: pna:Pnap_2505 type IV secretory pathway TrbL components-like protein; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.823
Tint_1936
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pna:Pnap_2510 conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.811
Tint_1960
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pna:Pnap_2510 conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.811
Tint_1937
PFAM: Conjugal transfer protein; KEGG: pna:Pnap_2509 conjugal transfer protein.
 
     0.789
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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