STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_1985KEGG: aav:Aave_0711 IS66 Orf2 family protein; manually curated; PFAM: IS66 Orf2 family protein. (113 aa)    
Predicted Functional Partners:
Tint_1984
PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66.
 
     0.901
Tint_1983
PFAM: transposase IS66; KEGG: ajs:Ajs_2916 transposase IS66.
 
     0.898
Tint_1520
PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66.
 
     0.776
Tint_1986
KEGG: pna:Pnap_4707 transposase IS3/IS911 family protein.
       0.773
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.