STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2002PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_0279 major facilitator superfamily MFS_1. (459 aa)    
Predicted Functional Partners:
Tint_3173
Amino acid adenylation domain protein; KEGG: amr:AM1_A0235 peptide synthetase, putative; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
    
 0.841
Tint_2095
Manually curated; TIGRFAM: amino acid adenylation domain protein; KEGG: vap:Vapar_3184 amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; aminotransferase class-III.
    
 0.813
Tint_2096
KEGG: vap:Vapar_3185 amino acid adenylation domain protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
    
 0.813
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 0.795
Tint_2003
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_2589 transcriptional regulator, LysR family.
  
    0.546
Tint_3134
KEGG: ppg:PputGB1_0634 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1.
  
   
 0.535
Tint_0231
PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_1445 secretion protein HlyD family protein.
  
   
 0.424
Tint_1416
KEGG: tgr:Tgr7_2385 hypothetical protein.
     
  0.419
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.419
Tint_1587
PFAM: AMP-dependent synthetase and ligase; KEGG: bpy:Bphyt_5034 acyl-CoA synthetase.
  
  
 0.400
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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