Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2005KEGG: pol:Bpro_4479 OsmC-like protein; manually curated; PFAM: OsmC family protein. (154 aa)    
Predicted Functional Partners:
Tint_0789
PFAM: Ferritin Dps family protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein; Belongs to the Dps family.
  
  
 0.735
Tint_2006
KEGG: spe:Spro_1379 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase.
 
   
 0.656
Tint_0056
PFAM: protein of unknown function DUF1508; KEGG: lch:Lcho_4181 hypothetical protein.
   
    0.638
Tint_2215
PFAM: aldo/keto reductase; KEGG: vap:Vapar_3942 aldo/keto reductase.
  
  
 0.520
Tint_2007
PFAM: YCII-related; KEGG: bid:Bind_1394 YCII-related.
       0.485
bamE
SmpA/OmlA domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.441
Tint_0792
KEGG: dar:Daro_0025 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein.
  
  
 0.432
Tint_1254
PFAM: protein of unknown function UPF0153; KEGG: bam:Bamb_0792 hypothetical protein.
  
  
 0.432
Tint_1179
Diguanylate phosphodiesterase with GAF sensor(s); KEGG: bxe:Bxe_B2627 GAF sensor diguanylate phosphsdiesterase; PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein.
   
    0.422
Tint_2683
TIGRFAM: glucosylglycerol-phosphate synthase; KEGG: tbd:Tbd_2626 glucosyl-glycerol-phosphate synthase; PFAM: glycosyl transferase family 20.
   
    0.421
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.