Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2008Glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_1054 hypothetical protein; manually curated; PFAM: glutathione-dependent formaldehyde-activating GFA. (137 aa)    
Predicted Functional Partners:
Tint_1259
PFAM: Pirin domain protein; KEGG: bcj:BCAL1030 pirin-like protein; Belongs to the pirin family.
 
      0.674
Tint_2007
PFAM: YCII-related; KEGG: bid:Bind_1394 YCII-related.
       0.515
Tint_3175
PFAM: Carboxymuconolactone decarboxylase; KEGG: pnu:Pnuc_0486 carboxymuconolactone decarboxylase.
 
     0.496
Tint_2006
KEGG: spe:Spro_1379 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase.
       0.422
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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