STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2440PFAM: DNA polymerase beta domain protein region; KEGG: avn:Avin_50230 DNA polymerase, beta-like region-containing protein. (96 aa)    
Predicted Functional Partners:
Tint_2439
PFAM: protein of unknown function DUF86; KEGG: avn:Avin_50240 hypothetical protein.
 
  
 0.948
Tint_2438
DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: bte:BTH_I0984 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type.
       0.558
Tint_2443
PFAM: glycosyl transferase family 2; KEGG: lhk:LHK_02953 glycosyltransferase.
       0.506
Tint_2441
PFAM: sodium/hydrogen exchanger; KEGG: lch:Lcho_3224 sodium/hydrogen exchanger.
       0.499
Tint_2442
Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.499
Tint_2444
PFAM: glycosyl transferase group 1; KEGG: rpi:Rpic_2402 glycosyl transferase group 1.
       0.499
Tint_1965
PFAM: protein of unknown function DUF497; KEGG: xfa:XF1562 hypothetical protein.
  
   
 0.446
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.