STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2470KEGG: tmz:Tmz1t_1899 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein. (481 aa)    
Predicted Functional Partners:
Tint_2468
KEGG: ank:AnaeK_0891 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
 
 
 0.999
Tint_2469
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: tmz:Tmz1t_1898 FeS assembly ATPase SufC; SMART: AAA ATPase.
 
 0.999
Tint_2467
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.984
Tint_2465
KEGG: hha:Hhal_1972 hypothetical protein; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59.
 
   
 0.924
Tint_2466
KEGG: gvi:glr1374 hypothetical protein; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
 
  
 0.921
Tint_1059
KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
 
 0.818
Tint_0205
KEGG: tro:trd_A0236 hypothetical protein.
  
 
 0.733
Tint_1058
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.692
Tint_2471
PFAM: class II aldolase/adducin family protein; KEGG: mei:Msip34_1983 class II aldolase/adducin family protein.
       0.668
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters.
  
 
 0.511
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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